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mandegar et  (Addgene inc)


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    Structured Review

    Addgene inc mandegar et
    Mandegar Et, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 14 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pgrna+ckb/pgRNA-CKB+(Plasmid+%2373501)/pmc12714712-139-4-9
    Average 93 stars, based on 14 article reviews
    mandegar et - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: The pRb/RBL2-E2F1/4-GCN5 axis regulates cancer stem cell formation and G0 phase entry/exit by paracrine mechanisms.
    Article Snippet: .. Dox was added together with fresh media. pAAVS1-NDi-CRISPRi (Gen2) was a gift from Bruce Conklin (Addgene plasmid # 73498; http://n2t.net/addgene:73498; RRID:Addgene_73498). pgRNA-CKB was a gift from Bruce Conklin (Addgene plasmid # 73501; http://n2t.net/addgene:73501; RRID:Addgene_73501). .. Generating RB and RBL2 overexpressing cells For RB and RBL2 overexpression, sequence-validated Gateway attLflanked entry clones (Source BioScience Lifesciences, Cat no. B0065, T8278, for RB andRBL2 overexpression respectively), were transferred into a Gateway-compatible pTP6 vector containing a CAG promoter.

    Article Title: Spatially organized cellular communities form the developing human heart
    Article Snippet: .. To clone the PB- TNNT2:NLS-mKATE2-T2A-BsdR , we used the PB plasmid pcsj532 (a gift from K. Willert, UCSD) and used Gibson assembly (SGI, GA1200) to clone in a synthesized TNNT2 promoter (Integrated DNA Technologies), PCR-amplified NLS-mKATE2-T2A-BsdR (with polyA) from pgRNA-CKB (a gift from B. Conklin, Gladstone; Addgene, plasmid 73501) and PCR-amplified PGK:PuroR from RT3GEPIR (a gift from J. Zuber, IMP, Austria; Addgene, plasmid 111169). .. All three components were assembled in one Gibson assembly with pcsj532 digested using NheI (NEB R3131L).

    Article Title: BRD9-SMAD2/3 Orchestrates Stemness and Tumorigenesis in Pancreatic Ductal Adenocarcinoma
    Article Snippet: Cells were transfected with Dox-inducible CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus. pAAVS1-NDi-CRISPRi (Gen2) was a gift from Bruce Conklin (Addgene plasmid # 73498; http://n2t.net/addgene:73498 ; RRID:Addgene_73498). .. Stable cell lines were differentiated with guide RNA construct pgRNA-CKB with a gRNA cloned into the construct. pgRNA-CKB was a gift from Bruce Conklin (Addgene plasmid # 73501; http://n2t.net/addgene:73501; RRID: Addgene_73501). .. Cancer cell invasiveness was analysed by using a modified Boyden chamber-based assay, CultureCoat 96 Well High BME Cell Invasion Assay (Trevigen, Cat. No: 3483-096-K) or 24-well tanswell inserts with 8μm pores (Sarstedt, Cat no. 83.3932.800) with EHS Matrix Extract as basal 8 membrane (Merck) according to manufacturer’s guidelines.

    Article Title: The pRb/RBL2-E2F1/4-GCN5 axis regulates cancer stem cell formation and G0 phase entry/exit by paracrine mechanisms
    Article Snippet: .. Dox was added together with fresh media. pAAVS1-NDi-CRISPRi (Gen2) was a gift from Bruce Conklin (Addgene plasmid # 73498; http://n2t.net/addgene:73498 ; RRID:Addgene_73498). pgRNA-CKB was a gift from Bruce Conklin (Addgene plasmid # 73501; http://n2t.net/addgene:73501 ; RRID:Addgene_73501). .. For RB and RBL2 overexpression, sequence-validated Gateway attL-flanked entry clones (Source BioScience Lifesciences, Cat no. B0065, T8278, for RB and RBL2 overexpression respectively), were transferred into a Gateway-compatible pTP6 vector containing a CAG promoter.

    Article Title: RBL2-E2F-GCN5 guide cell fate decisions during tissue specification by regulating cell-cycle-dependent fluctuations of non-cell-autonomous signaling
    Article Snippet: pAAVS1-NDi-CRISPRi (Gen2) , Mandegar et al. , Addgene plasmid # 73498. .. pgRNA-CKB , Mandegar et al. , Addgene plasmid # 73501. ..

    Article Title: CRTC1/MAML2 directs a PGC-1α-IGF-1 circuit that confers vulnerability to PPARγ inhibition
    Article Snippet: dCas9-KRAB-IRES-BFP , , Addgene plasmid #85449. .. pgRNA-CKB , , Addgene plasmid #73501. .. pSico_U6-Pan-PGC1a sgPGC , This paper , Addgene plasmid #165426.

    Synthesized:

    Article Title: Spatially organized cellular communities form the developing human heart
    Article Snippet: .. To clone the PB- TNNT2:NLS-mKATE2-T2A-BsdR , we used the PB plasmid pcsj532 (a gift from K. Willert, UCSD) and used Gibson assembly (SGI, GA1200) to clone in a synthesized TNNT2 promoter (Integrated DNA Technologies), PCR-amplified NLS-mKATE2-T2A-BsdR (with polyA) from pgRNA-CKB (a gift from B. Conklin, Gladstone; Addgene, plasmid 73501) and PCR-amplified PGK:PuroR from RT3GEPIR (a gift from J. Zuber, IMP, Austria; Addgene, plasmid 111169). .. All three components were assembled in one Gibson assembly with pcsj532 digested using NheI (NEB R3131L).

    Polymerase Chain Reaction:

    Article Title: Spatially organized cellular communities form the developing human heart
    Article Snippet: .. To clone the PB- TNNT2:NLS-mKATE2-T2A-BsdR , we used the PB plasmid pcsj532 (a gift from K. Willert, UCSD) and used Gibson assembly (SGI, GA1200) to clone in a synthesized TNNT2 promoter (Integrated DNA Technologies), PCR-amplified NLS-mKATE2-T2A-BsdR (with polyA) from pgRNA-CKB (a gift from B. Conklin, Gladstone; Addgene, plasmid 73501) and PCR-amplified PGK:PuroR from RT3GEPIR (a gift from J. Zuber, IMP, Austria; Addgene, plasmid 111169). .. All three components were assembled in one Gibson assembly with pcsj532 digested using NheI (NEB R3131L).

    Article Title: Parallel functional assessment of m 6 A sites in human endodermal differentiation with base editor screens
    Article Snippet: U6-sgRNA fragment free FNLS-ABE7.10(AW) expression plasmid (Lenti-FNLS-ABE7.10(AW)-P2A-Puro) was generated by ligating the fragment of Kpn I/ EcoR I-digested Lenti-FNLS-ABE7.10(AW)-P2A-Puro-U6-sgRNA using T4 DNA Ligase (New England Biolabs, M0202). .. LentiGuide-BSD-dTomato was generated by combining the PCR-amplified blasticidin S deaminase segment from pgRNA-CKB (Addgene, #73501) and the Eco R I/ Xba I-digested LentiGuide-Hygro-dTomato (Addgene, #99376) backbone. ..

    Article Title: Parallel functional assessment of m 6 A sites in human endodermal differentiation with base editor screens.
    Article Snippet: U6-sgRNA fragment free FNLS-ABE7.10(AW) expression plasmid (Lenti-FNLS-ABE7.10(AW)-P2A-Puro) was generated by ligating the fragment of Kpn I/EcoR I-digested Lenti-FNLS-ABE7.10(AW)-P2A-Puro-U6-sgRNA using T4 DNA Ligase (New England Biolabs, M0202). .. LentiGuide-BSD-dTomato was generated by combining the PCR-amplified blasticidin S deaminase segment from pgRNA-CKB (Addgene, #73501) and the EcoR I/Xba I-digested LentiGuideHygro-dTomato (Addgene, #99376) backbone. ..

    Generated:

    Article Title: Parallel functional assessment of m 6 A sites in human endodermal differentiation with base editor screens
    Article Snippet: U6-sgRNA fragment free FNLS-ABE7.10(AW) expression plasmid (Lenti-FNLS-ABE7.10(AW)-P2A-Puro) was generated by ligating the fragment of Kpn I/ EcoR I-digested Lenti-FNLS-ABE7.10(AW)-P2A-Puro-U6-sgRNA using T4 DNA Ligase (New England Biolabs, M0202). .. LentiGuide-BSD-dTomato was generated by combining the PCR-amplified blasticidin S deaminase segment from pgRNA-CKB (Addgene, #73501) and the Eco R I/ Xba I-digested LentiGuide-Hygro-dTomato (Addgene, #99376) backbone. ..

    Article Title: Parallel functional assessment of m 6 A sites in human endodermal differentiation with base editor screens.
    Article Snippet: U6-sgRNA fragment free FNLS-ABE7.10(AW) expression plasmid (Lenti-FNLS-ABE7.10(AW)-P2A-Puro) was generated by ligating the fragment of Kpn I/EcoR I-digested Lenti-FNLS-ABE7.10(AW)-P2A-Puro-U6-sgRNA using T4 DNA Ligase (New England Biolabs, M0202). .. LentiGuide-BSD-dTomato was generated by combining the PCR-amplified blasticidin S deaminase segment from pgRNA-CKB (Addgene, #73501) and the EcoR I/Xba I-digested LentiGuideHygro-dTomato (Addgene, #99376) backbone. ..

    Stable Transfection:

    Article Title: BRD9-SMAD2/3 Orchestrates Stemness and Tumorigenesis in Pancreatic Ductal Adenocarcinoma
    Article Snippet: Cells were transfected with Dox-inducible CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus. pAAVS1-NDi-CRISPRi (Gen2) was a gift from Bruce Conklin (Addgene plasmid # 73498; http://n2t.net/addgene:73498 ; RRID:Addgene_73498). .. Stable cell lines were differentiated with guide RNA construct pgRNA-CKB with a gRNA cloned into the construct. pgRNA-CKB was a gift from Bruce Conklin (Addgene plasmid # 73501; http://n2t.net/addgene:73501; RRID: Addgene_73501). .. Cancer cell invasiveness was analysed by using a modified Boyden chamber-based assay, CultureCoat 96 Well High BME Cell Invasion Assay (Trevigen, Cat. No: 3483-096-K) or 24-well tanswell inserts with 8μm pores (Sarstedt, Cat no. 83.3932.800) with EHS Matrix Extract as basal 8 membrane (Merck) according to manufacturer’s guidelines.

    Construct:

    Article Title: BRD9-SMAD2/3 Orchestrates Stemness and Tumorigenesis in Pancreatic Ductal Adenocarcinoma
    Article Snippet: Cells were transfected with Dox-inducible CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus. pAAVS1-NDi-CRISPRi (Gen2) was a gift from Bruce Conklin (Addgene plasmid # 73498; http://n2t.net/addgene:73498 ; RRID:Addgene_73498). .. Stable cell lines were differentiated with guide RNA construct pgRNA-CKB with a gRNA cloned into the construct. pgRNA-CKB was a gift from Bruce Conklin (Addgene plasmid # 73501; http://n2t.net/addgene:73501; RRID: Addgene_73501). .. Cancer cell invasiveness was analysed by using a modified Boyden chamber-based assay, CultureCoat 96 Well High BME Cell Invasion Assay (Trevigen, Cat. No: 3483-096-K) or 24-well tanswell inserts with 8μm pores (Sarstedt, Cat no. 83.3932.800) with EHS Matrix Extract as basal 8 membrane (Merck) according to manufacturer’s guidelines.

    Clone Assay:

    Article Title: BRD9-SMAD2/3 Orchestrates Stemness and Tumorigenesis in Pancreatic Ductal Adenocarcinoma
    Article Snippet: Cells were transfected with Dox-inducible CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus. pAAVS1-NDi-CRISPRi (Gen2) was a gift from Bruce Conklin (Addgene plasmid # 73498; http://n2t.net/addgene:73498 ; RRID:Addgene_73498). .. Stable cell lines were differentiated with guide RNA construct pgRNA-CKB with a gRNA cloned into the construct. pgRNA-CKB was a gift from Bruce Conklin (Addgene plasmid # 73501; http://n2t.net/addgene:73501; RRID: Addgene_73501). .. Cancer cell invasiveness was analysed by using a modified Boyden chamber-based assay, CultureCoat 96 Well High BME Cell Invasion Assay (Trevigen, Cat. No: 3483-096-K) or 24-well tanswell inserts with 8μm pores (Sarstedt, Cat no. 83.3932.800) with EHS Matrix Extract as basal 8 membrane (Merck) according to manufacturer’s guidelines.



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